PF06411


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF06411, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 11 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF06411
Description HdeA/HdeB family

Occurence in the database

PF06411 is associated with 11 different proteins (see tab "Protein list" and "Profile")
The 11 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3267 FBDBKF_07400 163395 163736 1 hdeA acid-activated periplasmic chaperone HdeA Morganella morganii S1
1 group_2890 FBDBKF_11905 32028 32330 1 hdeB Acid stress chaperone HdeB Morganella morganii S1
2 group_3267 EHELCC_03570 22450 22791 -1 hdeA acid-activated periplasmic chaperone HdeA Morganella morganii S2
3 group_2890 EHELCC_14400 102375 102677 -1 hdeB Acid stress chaperone HdeB Morganella morganii S2
4 group_3267 NLDBIP_03570 22246 22587 -1 hdeA acid-activated periplasmic chaperone HdeA Morganella morganii S4
5 group_2890 NLDBIP_15495 106312 106614 -1 hdeB Acid stress chaperone HdeB Morganella morganii S4
6 group_3267 LHKJJB_09400 22360 22701 -1 hdeA acid-activated periplasmic chaperone HdeA Morganella morganii S3
7 group_2890 LHKJJB_15115 32028 32330 1 hdeB Acid stress chaperone HdeB Morganella morganii S3
8 group_3267 HKOGLL_09575 168351 168692 1 hdeA acid-activated periplasmic chaperone HdeA Morganella morganii S5
9 group_2890 HKOGLL_14235 18691 18993 1 hdeB Acid stress chaperone HdeB Morganella morganii S5
10 group_2890 F4V73_RS14750 184994 185296 -1 HdeA/HdeB family chaperone Morganella psychrotolerans