PF06288


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF06288, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF06288
Description Protein of unknown function (DUF1040)

Occurence in the database

PF06288 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1707 FBDBKF_11895 30231 30500 -1 yihD DUF1040 domain-containing protein Morganella morganii S1
1 group_1707 EHELCC_14410 104205 104474 1 yihD DUF1040 domain-containing protein Morganella morganii S2
2 group_1707 NLDBIP_15505 108142 108411 1 yihD DUF1040 domain-containing protein Morganella morganii S4
3 group_1707 LHKJJB_15105 30231 30500 -1 yihD DUF1040 domain-containing protein Morganella morganii S3
4 group_1707 HKOGLL_14225 16894 17163 -1 yihD DUF1040 domain-containing protein Morganella morganii S5
5 group_1707 F4V73_RS14760 186958 187227 1 YihD family protein Morganella psychrotolerans
6 group_1707 PMI_RS13980 3105331 3105600 -1 YihD family protein Proteus mirabilis HI4320