Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF06183, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 20 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
Description
External link | PF06183 |
---|---|
Description | DinI-like family |
Occurence in the database
PF06183 is associated with 20 different proteins (see tab "Protein list" and "Profile") |
The 20 proteins are classified into 2 different orthogroup(s) |
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_68 | FBDBKF_05865 | 180158 | 180442 | 1 | DNA-damage-inducible protein I | Morganella morganii S1 | |
1 | group_1651 | FBDBKF_10975 | 19130 | 19381 | 1 | dinI | DinI family protein | Morganella morganii S1 |
2 | group_68 | FBDBKF_14920 | 84487 | 84771 | 1 | DNA-damage-inducible protein I | Morganella morganii S1 | |
3 | group_1651 | EHELCC_05250 | 40087 | 40338 | -1 | dinI | DinI family protein | Morganella morganii S2 |
4 | group_68 | EHELCC_11725 | 1052 | 1336 | -1 | DNA-damage-inducible protein I | Morganella morganii S2 | |
5 | group_68 | EHELCC_15725 | 114563 | 114847 | 1 | DNA-damage-inducible protein I | Morganella morganii S2 | |
6 | group_68 | EHELCC_19235 | 15159 | 15443 | 1 | DNA-damage-inducible protein I | Morganella morganii S2 | |
7 | group_1651 | NLDBIP_05570 | 81152 | 81403 | -1 | dinI | DinI family protein | Morganella morganii S4 |
8 | group_68 | NLDBIP_12065 | 1007 | 1291 | -1 | DNA-damage-inducible protein I | Morganella morganii S4 | |
9 | group_68 | NLDBIP_16255 | 114563 | 114847 | 1 | DNA-damage-inducible protein I | Morganella morganii S4 | |
10 | group_68 | NLDBIP_19205 | 21098 | 21382 | 1 | DNA-damage-inducible protein I | Morganella morganii S4 | |
11 | group_1651 | LHKJJB_02450 | 58676 | 58927 | -1 | dinI | DinI family protein | Morganella morganii S3 |
12 | group_68 | LHKJJB_11925 | 1052 | 1336 | -1 | DNA-damage-inducible protein I | Morganella morganii S3 | |
13 | group_68 | LHKJJB_15585 | 1839 | 2123 | -1 | DNA-damage-inducible protein I | Morganella morganii S3 | |
14 | group_68 | LHKJJB_19095 | 21098 | 21382 | 1 | DNA-damage-inducible protein I | Morganella morganii S3 | |
15 | group_68 | HKOGLL_10540 | 1052 | 1336 | -1 | DNA-damage-inducible protein I | Morganella morganii S5 | |
16 | group_68 | HKOGLL_14705 | 1051 | 1335 | -1 | DNA-damage-inducible protein I | Morganella morganii S5 | |
17 | group_1651 | HKOGLL_15830 | 82116 | 82367 | -1 | dinI | DinI family protein | Morganella morganii S5 |
18 | group_1651 | F4V73_RS08250 | 1713816 | 1714064 | -1 | DinI-like family protein | Morganella psychrotolerans | |
19 | group_1651 | PMI_RS09650 | 2106395 | 2106640 | -1 | DinI-like family protein | Proteus mirabilis HI4320 |