PF05936


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF05936, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 11 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF05936
Description Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE

Occurence in the database

PF05936 is associated with 11 different proteins (see tab "Protein list" and "Profile")
The 11 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_112 FBDBKF_01325 256174 257526 1 tssK type VI secretion system baseplate subunit TssK Morganella morganii S1
1 group_112 EHELCC_00220 51342 52694 -1 tssK type VI secretion system baseplate subunit TssK Morganella morganii S2
2 group_112 NLDBIP_03240 627442 628794 1 tssK type VI secretion system baseplate subunit TssK Morganella morganii S4
3 group_112 LHKJJB_04755 234683 236035 1 tssK type VI secretion system baseplate subunit TssK Morganella morganii S3
4 group_112 HKOGLL_02290 51547 52899 -1 tssK type VI secretion system baseplate subunit TssK Morganella morganii S5
5 group_112 F4V73_RS00035 10026 11381 -1 tssK type VI secretion system baseplate subunit TssK Morganella psychrotolerans
6 group_112 F4V73_RS02345 498501 499853 -1 tssK type VI secretion system baseplate subunit TssK Morganella psychrotolerans
7 group_112 F4V73_RS06980 1448773 1450074 -1 tssK type VI secretion system baseplate subunit TssK Morganella psychrotolerans
8 group_112 F4V73_RS09345 1966743 1968089 -1 tssK type VI secretion system baseplate subunit TssK Morganella psychrotolerans
9 group_112 F4V73_RS16860 200424 201761 -1 tssK type VI secretion system baseplate subunit TssK Morganella psychrotolerans
10 group_112 PMI_RS03650 821407 822765 -1 tssK type VI secretion system baseplate subunit TssK Proteus mirabilis HI4320