Orthogroup:group_110


Homologs in group_110

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11 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_00360 FBDBKF_00360 Morganella morganii S1 - Integrase
FBDBKF_11145 FBDBKF_11145 Morganella morganii S1 xerD Site-specific recombinase XerD
EHELCC_01185 EHELCC_01185 Morganella morganii S2 - Integrase
EHELCC_05080 EHELCC_05080 Morganella morganii S2 xerD Site-specific recombinase XerD
NLDBIP_02275 NLDBIP_02275 Morganella morganii S4 - Integrase
NLDBIP_05400 NLDBIP_05400 Morganella morganii S4 xerD Site-specific recombinase XerD
LHKJJB_02280 LHKJJB_02280 Morganella morganii S3 xerD Site-specific recombinase XerD
LHKJJB_03790 LHKJJB_03790 Morganella morganii S3 - Integrase
HKOGLL_03255 HKOGLL_03255 Morganella morganii S5 - Integrase
HKOGLL_15660 HKOGLL_15660 Morganella morganii S5 xerD Site-specific recombinase XerD
F4V73_RS06340 F4V73_RS06340 Morganella psychrotolerans - site-specific integrase

Distribution of group_110 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_110 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_110

Orthogroup content: 11 members

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This page summarizes the annotation of all members of the orthologous group group_110.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 - 6
2 xerD 5

Product

# Product Occurence
1 Integrase 5
2 Site-specific recombinase XerD 5
3 site-specific integrase 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG4974 11 L Replication, recombination and repair (L) Site-specific recombinase XerD

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03111 11 single-strand DNA-binding protein DNA replication
Mismatch repair
Homologous recombination		 -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00589 11 Phage integrase family

Annotations of the 118 SwissProt hits

Annotation Number of occurrences
ICEBs1 integrase 1
Integrase 4
Prophage integrase IntD 1
Prophage integrase IntR 1
Putative defective protein IntQ 1
Putative integrase 1
Putative integrase/recombinase HI_1414 1
Putative integrase/recombinase y4eF 1
Putative integrase/recombinase y4qK 1
Putative prophage phiRv2 integrase 2
Shufflon-specific DNA recombinase 2
Transposase B from transposon Tn554 3
Tyrosine recombinase EUBREC_2677 1
Tyrosine recombinase THA_404 1
Tyrosine recombinase Tlet_1492 1
Tyrosine recombinase XerA 6
Tyrosine recombinase XerC 48
Tyrosine recombinase XerC 2 1
Tyrosine recombinase XerC-like 1
Tyrosine recombinase XerD 40

Protein length

Min length 383
Max length 387
Mean length (sd) 384.8 (2.1)
Median length 383.0

Protein length distribution