PF05552


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF05552, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF05552
Description Mechanosensitive ion channel, conserved TM helix

Occurence in the database

PF05552 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_835 FBDBKF_04210 26406 27266 -1 mscS Small-conductance mechanosensitive channel Morganella morganii S1
1 group_835 EHELCC_05500 85863 86723 -1 mscS Small-conductance mechanosensitive channel Morganella morganii S2
2 group_835 NLDBIP_05820 126928 127788 -1 mscS Small-conductance mechanosensitive channel Morganella morganii S4
3 group_835 LHKJJB_02700 104452 105312 -1 mscS Small-conductance mechanosensitive channel Morganella morganii S3
4 group_835 HKOGLL_06175 26316 27176 -1 mscS Small-conductance mechanosensitive channel Morganella morganii S5
5 group_835 F4V73_RS08655 1786207 1787067 -1 mscS small-conductance mechanosensitive channel MscS Morganella psychrotolerans
6 group_835 PMI_RS10050 2179738 2180598 -1 mscS small-conductance mechanosensitive channel MscS Proteus mirabilis HI4320