PF05525


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF05525, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 13 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF05525
Description Branched-chain amino acid transport protein

Occurence in the database

PF05525 is associated with 13 different proteins (see tab "Protein list" and "Profile")
The 13 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2968 FBDBKF_16400 4433 5755 -1 brnQ branched-chain amino acid transport system II carrier protein Morganella morganii S1
1 group_2265 FBDBKF_17425 15579 16910 -1 brnQ branched-chain amino acid transport system II carrier protein Morganella morganii S1
2 group_2968 EHELCC_08265 121419 122741 -1 brnQ branched-chain amino acid transport system II carrier protein Morganella morganii S2
3 group_2265 EHELCC_17320 15579 16910 -1 brnQ branched-chain amino acid transport system II carrier protein Morganella morganii S2
4 group_2968 NLDBIP_08590 121419 122741 -1 brnQ branched-chain amino acid transport system II carrier protein Morganella morganii S4
5 group_2265 NLDBIP_17875 25886 27217 1 brnQ branched-chain amino acid transport system II carrier protein Morganella morganii S4
6 group_2968 LHKJJB_05675 134418 135740 1 brnQ branched-chain amino acid transport system II carrier protein Morganella morganii S3
7 group_2265 LHKJJB_17795 25884 27215 1 brnQ branched-chain amino acid transport system II carrier protein Morganella morganii S3
8 group_2968 HKOGLL_05240 106010 107332 -1 brnQ branched-chain amino acid transport system II carrier protein Morganella morganii S5
9 group_2265 HKOGLL_17805 25884 27215 1 brnQ branched-chain amino acid transport system II carrier protein Morganella morganii S5
10 group_2265 F4V73_RS16600 139312 140643 -1 brnQ branched-chain amino acid transport system II carrier protein Morganella psychrotolerans
11 group_2265 PMI_RS00260 81447 82784 1 brnQ branched-chain amino acid transport system II carrier protein Proteus mirabilis HI4320
12 group_2968 PMI_RS07805 1708612 1709964 1 brnQ branched-chain amino acid transport system II carrier protein Proteus mirabilis HI4320