PF04860


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF04860, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 12 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF04860
Description Phage portal protein

Occurence in the database

PF04860 is associated with 12 different proteins (see tab "Protein list" and "Profile")
The 12 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3563 FBDBKF_18630 13329 14552 -1 phage portal protein Morganella morganii S1
1 group_2411 FBDBKF_19410 12461 13798 -1 phage portal protein Morganella morganii S1
2 group_3563 EHELCC_15205 13329 14552 -1 phage portal protein Morganella morganii S2
3 group_2411 EHELCC_19250 142 942 1 Phage portal protein, HK97 family Morganella morganii S2
4 group_3563 NLDBIP_15735 13329 14552 -1 phage portal protein Morganella morganii S4
5 group_2411 NLDBIP_19380 142 942 1 Phage portal protein, HK97 family Morganella morganii S4
6 group_3563 LHKJJB_16105 102134 103357 1 phage portal protein Morganella morganii S3
7 group_2411 LHKJJB_19425 12461 13261 -1 Phage portal protein, HK97 family Morganella morganii S3
8 group_3563 HKOGLL_15225 101346 102569 1 phage portal protein Morganella morganii S5
9 group_2411 HKOGLL_19185 142 942 1 Phage portal protein, HK97 family Morganella morganii S5
10 group_2411 PMI_RS04535 1007158 1008426 1 phage portal protein Proteus mirabilis HI4320
11 group_2411 PMI_RS09830 2136800 2137828 1 phage portal protein Proteus mirabilis HI4320