Homologs in group_2411

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_19410 FBDBKF_19410 23.6 Morganella morganii S1 - phage portal protein
EHELCC_19250 EHELCC_19250 23.6 Morganella morganii S2 - Phage portal protein, HK97 family
NLDBIP_19380 NLDBIP_19380 23.6 Morganella morganii S4 - Phage portal protein, HK97 family
LHKJJB_19425 LHKJJB_19425 23.6 Morganella morganii S3 - Phage portal protein, HK97 family
HKOGLL_19185 HKOGLL_19185 23.6 Morganella morganii S5 - Phage portal protein, HK97 family
PMI_RS04535 PMI_RS04535 20.8 Proteus mirabilis HI4320 - phage portal protein

Distribution of the homologs in the orthogroup group_2411

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2411

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P21314 1.09e-149 427 63 0 303 3 None Protein ORF5 in retron Ec67 Escherichia coli
P25480 6.92e-148 423 59 3 343 1 Q Probable portal protein Escherichia phage P2
P51717 7.51e-58 193 37 4 281 3 None Probable portal protein Haemophilus phage HP1 (strain HP1c1)
Q1RIH4 4.53e-05 48 27 12 259 3 RBE_0759 Uncharacterized protein RBE_0759 Rickettsia bellii (strain RML369-C)
Q4UM95 0.000659 45 27 14 259 3 RF_0471 Uncharacterized protein RF_0471 Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS09830
Feature type CDS
Gene -
Product phage portal protein
Location 2136800 - 2137828 (strand: 1)
Length 1029 (nucleotides) / 342 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2411
Orthogroup size 7
N. genomes 6

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Genomic region

Domains

PF04860 Phage portal protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG5518 Mobilome: prophages, transposons (X) X Phage capsid portal protein XkdE

Protein Sequence

MSRKNKKRFKTQQTATANNSMEAFTFGEPVPVLDKREIFDYLECAQIDNWYEPPVSFDGLSKLFRAATHHSSAIYVKRNILVSTFQPNRFLSKLDFSRFALDFLTFGNAYLERRNNMVGNLLKLTPVLAKYTRRGVADDSYWFVRYGYDSKPYEFKPGSVFQLYEPDLNQELYGLPEYLASTMSVLLNEASTLFRLKYYRNGSHAGFILYVSDASQNQSDIDKIRNAMQNSKGPGNFRNLFIHAPNGKKDGVQVIPLSEIAAKDEFLNIKNVSRDDMLAAHRVPPQMMGIIPQNTGGFGDVEKAAKVFFRNELAPLQSKILQINDWLGEEVIKFDKYTLDDE

Flanking regions ( +/- flanking 50bp)

CCATTAACCGGCACCACCGAGAACAGTAATAACATTGTGGAGATTTATTGATGAGCCGTAAAAATAAAAAACGTTTTAAAACACAACAAACGGCAACCGCCAATAACAGCATGGAAGCCTTTACTTTTGGTGAGCCCGTTCCGGTGTTAGATAAACGAGAAATCTTTGATTATCTGGAGTGTGCGCAAATTGATAATTGGTATGAGCCACCGGTTAGCTTTGATGGGTTATCAAAACTGTTTCGTGCGGCGACGCATCATAGCAGTGCAATTTATGTCAAACGTAATATTTTAGTCAGCACATTTCAGCCTAACCGTTTTCTCTCTAAGTTAGACTTTAGCCGATTTGCTCTCGACTTCTTAACCTTTGGCAATGCCTACCTTGAACGTCGTAATAATATGGTGGGTAACTTATTAAAACTCACCCCCGTTCTCGCCAAATATACCCGCCGTGGTGTTGCTGATGATAGCTATTGGTTTGTGCGCTATGGCTATGACTCAAAGCCGTATGAATTTAAGCCCGGTAGTGTATTTCAGTTATACGAACCCGATTTAAATCAAGAGCTATACGGGTTACCAGAATATCTGGCCTCCACCATGTCAGTGCTACTGAATGAAGCATCTACCCTCTTTCGCCTTAAGTATTATCGCAACGGAAGTCATGCCGGATTTATTTTATACGTCAGTGACGCCTCACAAAACCAAAGTGATATTGATAAAATCCGTAACGCAATGCAAAACTCAAAAGGCCCCGGTAATTTCCGCAACCTGTTTATCCACGCGCCGAACGGCAAAAAAGACGGAGTGCAAGTTATTCCATTAAGTGAGATTGCGGCAAAAGATGAATTTCTCAATATCAAGAATGTCAGCCGTGACGATATGTTAGCGGCACACCGCGTACCGCCTCAAATGATGGGGATCATTCCACAGAATACCGGTGGCTTTGGTGACGTAGAAAAAGCGGCAAAGGTTTTCTTTCGTAATGAGTTGGCACCACTGCAAAGCAAGATATTACAGATTAATGATTGGCTAGGTGAAGAAGTGATTAAGTTTGATAAGTACACATTAGATGATGAATAACTTCACCACACAAAGAACAATACCGCCGACACTGGCGGTATTTTTTACCT