PF04754


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF04754, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF04754
Description Putative transposase, YhgA-like

Occurence in the database

PF04754 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2435 FBDBKF_19765 16790 17737 1 rpnC Recombination-promoting DNA endonuclease RpnC/YadD Morganella morganii S1
1 group_2435 EHELCC_10860 210559 211506 1 rpnC Recombination-promoting DNA endonuclease RpnC/YadD Morganella morganii S2
2 group_2435 NLDBIP_11205 188830 189777 1 rpnC Recombination-promoting DNA endonuclease RpnC/YadD Morganella morganii S4
3 group_2435 LHKJJB_10150 1751 2698 -1 rpnC Recombination-promoting DNA endonuclease RpnC/YadD Morganella morganii S3
4 group_2435 HKOGLL_16315 1760 2707 -1 rpnC Recombination-promoting DNA endonuclease RpnC/YadD Morganella morganii S5
5 group_2435 PMI_RS12950 2872070 2872993 -1 Rpn family recombination-promoting nuclease/putative transposase Proteus mirabilis HI4320
6 group_2435 PMI_RS13745 3052300 3053268 -1 Rpn family recombination-promoting nuclease/putative transposase Proteus mirabilis HI4320