PF04492


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF04492, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 6 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF04492
Description Bacteriophage replication protein O

Occurence in the database

PF04492 is associated with 6 different proteins (see tab "Protein list" and "Profile")
The 6 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3339 FBDBKF_11255 65720 66559 1 Replication protein Morganella morganii S1
1 group_3339 EHELCC_17960 34156 34995 -1 Replication protein Morganella morganii S2
2 group_3339 NLDBIP_05290 33982 34821 -1 Replication protein Morganella morganii S4
3 group_3339 LHKJJB_02170 11506 12345 -1 Replication protein Morganella morganii S3
4 group_3339 HKOGLL_15550 34946 35785 -1 Replication protein Morganella morganii S5
5 group_220 F4V73_RS06230 1305064 1305960 -1 replication protein Morganella psychrotolerans