PF04390


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF04390, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF04390
Description Lipopolysaccharide-assembly

Occurence in the database

PF04390 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1550 FBDBKF_10040 102475 103029 1 lptE LPS assembly lipoprotein LptE Morganella morganii S1
1 group_1550 EHELCC_04840 294440 294994 1 lptE LPS assembly lipoprotein LptE Morganella morganii S2
2 group_1550 NLDBIP_04840 294236 294790 1 lptE LPS assembly lipoprotein LptE Morganella morganii S4
3 group_1550 LHKJJB_13790 40588 41142 -1 lptE LPS assembly lipoprotein LptE Morganella morganii S3
4 group_1550 HKOGLL_12745 103256 103810 1 lptE LPS assembly lipoprotein LptE Morganella morganii S5
5 group_1550 F4V73_RS00295 68660 69214 -1 lptE LPS assembly lipoprotein LptE Morganella psychrotolerans
6 group_1550 PMI_RS02130 498995 499543 -1 lptE LPS assembly lipoprotein LptE Proteus mirabilis HI4320