PF04386


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF04386, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF04386
Description Stringent starvation protein B

Occurence in the database

PF04386 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_715 FBDBKF_03115 26300 26788 -1 sspB ClpXP protease specificity-enhancing factor Morganella morganii S1
1 group_715 EHELCC_07420 220315 220803 1 sspB ClpXP protease specificity-enhancing factor Morganella morganii S2
2 group_715 NLDBIP_07745 220188 220676 1 sspB ClpXP protease specificity-enhancing factor Morganella morganii S4
3 group_715 LHKJJB_07280 183934 184422 1 sspB ClpXP protease specificity-enhancing factor Morganella morganii S3
4 group_715 HKOGLL_03650 48965 49453 -1 sspB ClpXP protease specificity-enhancing factor Morganella morganii S5
5 group_715 F4V73_RS11805 510491 510982 1 sspB ClpXP protease specificity-enhancing factor Morganella psychrotolerans
6 group_715 PMI_RS18270 4007196 4007705 1 sspB ClpXP protease specificity-enhancing factor Proteus mirabilis HI4320