PF04317


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF04317, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF04317
Description YcjX-like family, DUF463

Occurence in the database

PF04317 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1000 FBDBKF_05590 126813 128210 -1 ycjX DUF463 domain-containing protein Morganella morganii S1
1 group_1000 EHELCC_12000 53284 54681 1 ycjX DUF463 domain-containing protein Morganella morganii S2
2 group_1000 NLDBIP_12340 53239 54636 1 ycjX DUF463 domain-containing protein Morganella morganii S4
3 group_1000 LHKJJB_12200 53284 54681 1 ycjX DUF463 domain-containing protein Morganella morganii S3
4 group_1000 HKOGLL_10815 53284 54681 1 ycjX DUF463 domain-containing protein Morganella morganii S5
5 group_1000 F4V73_RS03715 787045 788442 1 YcjX family protein Morganella psychrotolerans
6 group_1000 PMI_RS06625 1451419 1452813 -1 YcjX family protein Proteus mirabilis HI4320