PF04269


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF04269, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF04269
Description Protein of unknown function, DUF440

Occurence in the database

PF04269 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_959 FBDBKF_05260 58405 58689 1 yciU HI1450 family dsDNA-mimic protein Morganella morganii S1
1 group_959 EHELCC_12330 122805 123089 -1 yciU HI1450 family dsDNA-mimic protein Morganella morganii S2
2 group_959 NLDBIP_12670 122760 123044 -1 yciU HI1450 family dsDNA-mimic protein Morganella morganii S4
3 group_959 LHKJJB_12530 122805 123089 -1 yciU HI1450 family dsDNA-mimic protein Morganella morganii S3
4 group_959 HKOGLL_11145 122805 123089 -1 yciU HI1450 family dsDNA-mimic protein Morganella morganii S5
5 group_959 F4V73_RS05715 1214947 1215279 1 HI1450 family dsDNA-mimic protein Morganella psychrotolerans
6 group_959 PMI_RS06555 1437609 1437938 1 HI1450 family dsDNA-mimic protein Proteus mirabilis HI4320