PF04241


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF04241, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF04241
Description Protein of unknown function (DUF423)

Occurence in the database

PF04241 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1074 FBDBKF_06090 42635 43030 -1 ygdD DUF423 domain-containing protein Morganella morganii S1
1 group_1074 EHELCC_09135 43207 43602 -1 ygdD DUF423 domain-containing protein Morganella morganii S2
2 group_1074 NLDBIP_09515 43207 43602 -1 ygdD DUF423 domain-containing protein Morganella morganii S4
3 group_1074 LHKJJB_08240 173636 174031 1 ygdD DUF423 domain-containing protein Morganella morganii S3
4 group_1074 HKOGLL_07790 173636 174031 1 ygdD DUF423 domain-containing protein Morganella morganii S5
5 group_1074 F4V73_RS15820 171520 171915 1 DUF423 domain-containing protein Morganella psychrotolerans
6 group_1074 PMI_RS11360 2500328 2500723 -1 DUF423 domain-containing protein Proteus mirabilis HI4320