PF04235


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF04235, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF04235
Description Protein of unknown function (DUF418)

Occurence in the database

PF04235 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1178 FBDBKF_06795 21576 22727 1 yeiB DUF418 domain-containing protein Morganella morganii S1
1 group_1178 EHELCC_04175 163459 164610 -1 yeiB DUF418 domain-containing protein Morganella morganii S2
2 group_1178 NLDBIP_04175 163255 164406 -1 yeiB DUF418 domain-containing protein Morganella morganii S4
3 group_1178 LHKJJB_10005 163369 164520 -1 yeiB DUF418 domain-containing protein Morganella morganii S3
4 group_1178 HKOGLL_08970 26532 27683 1 yeiB DUF418 domain-containing protein Morganella morganii S5
5 group_1178 F4V73_RS00935 198330 199481 1 yeiB DUF418 domain-containing protein YeiB Morganella psychrotolerans
6 group_1178 PMI_RS03155 695919 697070 1 yeiB DUF418 domain-containing protein YeiB Proteus mirabilis HI4320