Orthogroup:group_1238


Homologs in group_1238

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_07205 FBDBKF_07205 Morganella morganii S1 cmoM tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM
EHELCC_03765 EHELCC_03765 Morganella morganii S2 cmoM tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM
NLDBIP_03765 NLDBIP_03765 Morganella morganii S4 cmoM tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM
LHKJJB_09595 LHKJJB_09595 Morganella morganii S3 cmoM tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM
HKOGLL_09380 HKOGLL_09380 Morganella morganii S5 cmoM tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM
F4V73_RS01390 F4V73_RS01390 Morganella psychrotolerans cmoM tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM
PMI_RS03560 PMI_RS03560 Proteus mirabilis HI4320 cmoM tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM

Distribution of group_1238 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1238 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1238

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1238.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 cmoM 7

Product

# Product Occurence
1 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG2227 7 H Coenzyme transport and metabolism (H) 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K06219 7 tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF08241 7 Methyltransferase domain

Annotations of the 326 SwissProt hits

Annotation Number of occurrences
2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial 1
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 3
Biotin biosynthesis bifunctional protein BioHC 1
Malonyl-[acyl-carrier protein] O-methyltransferase 11
Malonyl-[acyl-carrier protein] O-methyltransferase 1 1
Malonyl-[acyl-carrier protein] O-methyltransferase 2 1
Methyltransferase gedG 1
Methyltransferase pgmE 2
Methyltransferase ptaH 1
Ubiquinone biosynthesis O-methyltransferase 194
Ubiquinone biosynthesis O-methyltransferase, mitochondrial 2
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE 98
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE (Fragment) 1
Uncharacterized methyltransferase MT0098 1
Uncharacterized methyltransferase Mb0092 1
Uncharacterized methyltransferase Rv0089 1
Uncharacterized protein MT1449 1
Uncharacterized protein Mb1440c 1
Uncharacterized protein Rv1405c 1
Uncharacterized protein syc1184_c 1
tRNA 5-carboxymethoxyuridine methyltransferase 2

Protein length

Min length 257
Max length 262
Mean length (sd) 261.1 (1.9)
Median length 262.0

Protein length distribution