PF04234


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF04234, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF04234
Description CopC domain

Occurence in the database

PF04234 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_582 FBDBKF_01670 26076 26459 1 copC copper homeostasis periplasmic binding protein CopC Morganella morganii S1
1 group_582 EHELCC_02140 413896 414279 1 copC copper homeostasis periplasmic binding protein CopC Morganella morganii S2
2 group_582 NLDBIP_01320 265857 266240 -1 copC copper homeostasis periplasmic binding protein CopC Morganella morganii S4
3 group_582 LHKJJB_00715 126445 126828 1 copC copper homeostasis periplasmic binding protein CopC Morganella morganii S3
4 group_582 HKOGLL_00755 131956 132339 1 copC copper homeostasis periplasmic binding protein CopC Morganella morganii S5
5 group_582 F4V73_RS04010 849491 849874 1 copC copper homeostasis periplasmic binding protein CopC Morganella psychrotolerans
6 group_582 PMI_RS04895 1071000 1071392 1 copC copper homeostasis periplasmic binding protein CopC Proteus mirabilis HI4320