Homologs in group_657

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01670 FBDBKF_01670 100.0 Morganella morganii S1 copC copper homeostasis periplasmic binding protein CopC
EHELCC_02140 EHELCC_02140 100.0 Morganella morganii S2 copC copper homeostasis periplasmic binding protein CopC
NLDBIP_01320 NLDBIP_01320 100.0 Morganella morganii S4 copC copper homeostasis periplasmic binding protein CopC
LHKJJB_00715 LHKJJB_00715 100.0 Morganella morganii S3 copC copper homeostasis periplasmic binding protein CopC
F4V73_RS04010 F4V73_RS04010 79.5 Morganella psychrotolerans copC copper homeostasis periplasmic binding protein CopC
PMI_RS04895 PMI_RS04895 55.1 Proteus mirabilis HI4320 copC copper homeostasis periplasmic binding protein CopC

Distribution of the homologs in the orthogroup group_657

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_657

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AA59 2.11e-25 95 42 0 114 3 yobA Protein YobA Shigella flexneri
P0AA57 2.11e-25 95 42 0 114 1 yobA Protein YobA Escherichia coli (strain K12)
P0AA58 2.11e-25 95 42 0 114 3 yobA Protein YobA Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q47454 1.47e-17 75 41 7 126 1 pcoC Copper resistance protein C Escherichia coli
C0SP95 3.65e-11 62 28 0 102 1 ycnJ Copper transport protein YcnJ Bacillus subtilis (strain 168)
P12376 2.21e-06 47 28 2 121 1 copC Copper resistance protein C Pseudomonas syringae pv. tomato
Q56797 4.98e-06 45 33 3 122 3 None Copper resistance protein C Xanthomonas campestris pv. juglandis

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_00755
Feature type CDS
Gene copC
Product copper homeostasis periplasmic binding protein CopC
Location 131956 - 132339 (strand: 1)
Length 384 (nucleotides) / 127 (amino acids)
In genomic island -

Contig

Accession ZDB_679
Length 398279 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_657
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04234 CopC domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2372 Inorganic ion transport and metabolism (P) P Copper-binding protein CopC (methionine-rich)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07156 copper resistance protein C - -

Protein Sequence

MLTNLTAHWRKLSAVVVLFVGLSGQQAFAHAHVKTLVPAADAAVTGSPENISLDFSEGIELKFSKISVKDAQNKPVAAGKPELAEGNDTRLILPLTETLPAGIYHVEWKVVSVDGHKTNGDYQFTVK

Flanking regions ( +/- flanking 50bp)

CTAGTATGTCCCGCATAATTACATCACCTGCAAAAATGAGGCATACCATTATGTTAACCAACCTGACCGCGCACTGGCGCAAATTATCTGCTGTTGTTGTTTTATTTGTCGGTTTATCCGGCCAGCAGGCGTTCGCTCACGCTCATGTCAAAACCCTGGTTCCGGCGGCAGATGCGGCGGTGACCGGTTCACCGGAAAATATCTCTCTGGATTTTTCAGAAGGGATTGAACTGAAATTCAGTAAAATCAGTGTGAAAGATGCACAGAATAAACCGGTTGCTGCCGGAAAACCGGAGCTGGCGGAAGGGAATGATACCCGCCTGATCCTGCCGCTGACAGAAACGCTGCCGGCCGGTATCTATCACGTTGAATGGAAAGTAGTTTCTGTTGACGGGCACAAAACAAACGGTGACTATCAGTTTACGGTGAAATAAACCGGTTATGGAACTGACACCGGAAGCGCTGTTGATTATCTGCCGCTTCA