PF04074


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF04074, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 11 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF04074
Description YhcH/YjgK/YiaL

Occurence in the database

PF04074 is associated with 11 different proteins (see tab "Protein list" and "Profile")
The 11 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3320 FBDBKF_11040 29460 29909 -1 ebgC beta-galactosidase subunit beta Morganella morganii S1
1 group_2942 FBDBKF_14945 2331 2804 -1 nanQ N-acetylneuraminate anomerase Morganella morganii S1
2 group_3320 EHELCC_05185 29559 30008 1 ebgC beta-galactosidase subunit beta Morganella morganii S2
3 group_2942 EHELCC_11300 82102 82575 1 nanQ N-acetylneuraminate anomerase Morganella morganii S2
4 group_3320 NLDBIP_05505 70624 71073 1 ebgC beta-galactosidase subunit beta Morganella morganii S4
5 group_2942 NLDBIP_11645 82102 82575 1 nanQ N-acetylneuraminate anomerase Morganella morganii S4
6 group_3320 LHKJJB_02385 48148 48597 1 ebgC beta-galactosidase subunit beta Morganella morganii S3
7 group_2942 LHKJJB_11505 82102 82575 1 nanQ N-acetylneuraminate anomerase Morganella morganii S3
8 group_2942 HKOGLL_10115 82102 82575 1 nanQ N-acetylneuraminate anomerase Morganella morganii S5
9 group_3320 HKOGLL_15765 71588 72037 1 ebgC beta-galactosidase subunit beta Morganella morganii S5
10 group_2942 PMI_RS14710 3261805 3262278 -1 nanQ N-acetylneuraminate anomerase Proteus mirabilis HI4320