PF03968


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03968, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF03968
Description LptA/(LptD N-terminal domain) LPS transport protein

Occurence in the database

PF03968 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_733 FBDBKF_03240 49358 49894 1 lptA lipopolysaccharide ABC transporter substrate-binding protein LptA Morganella morganii S1
1 group_1098 FBDBKF_06250 81794 84154 1 lptD LPS assembly protein LptD Morganella morganii S1
2 group_733 EHELCC_07295 197209 197745 -1 lptA lipopolysaccharide ABC transporter substrate-binding protein LptA Morganella morganii S2
3 group_1098 EHELCC_09295 82366 84726 1 lptD LPS assembly protein LptD Morganella morganii S2
4 group_733 NLDBIP_07620 197082 197618 -1 lptA lipopolysaccharide ABC transporter substrate-binding protein LptA Morganella morganii S4
5 group_1098 NLDBIP_09675 82366 84726 1 lptD LPS assembly protein LptD Morganella morganii S4
6 group_733 LHKJJB_07155 160828 161364 -1 lptA lipopolysaccharide ABC transporter substrate-binding protein LptA Morganella morganii S3
7 group_1098 LHKJJB_08080 132512 134872 -1 lptD LPS assembly protein LptD Morganella morganii S3
8 group_733 HKOGLL_03775 72023 72559 1 lptA lipopolysaccharide ABC transporter substrate-binding protein LptA Morganella morganii S5
9 group_1098 HKOGLL_07630 132512 134872 -1 lptD LPS assembly protein LptD Morganella morganii S5
10 group_733 F4V73_RS11680 486752 487288 -1 lptA lipopolysaccharide ABC transporter substrate-binding protein LptA Morganella psychrotolerans
11 group_1098 F4V73_RS15670 130056 132422 -1 lptD LPS assembly protein LptD Morganella psychrotolerans
12 group_1098 PMI_RS11530 2542503 2544869 1 lptD LPS assembly protein LptD Proteus mirabilis HI4320
13 group_733 PMI_RS18160 3987553 3988086 -1 lptA lipopolysaccharide ABC transporter substrate-binding protein LptA Proteus mirabilis HI4320