PF03956


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03956, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF03956
Description Lysine exporter LysO

Occurence in the database

PF03956 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1210 FBDBKF_07030 69637 70536 -1 lysO DUF340 domain-containing protein Morganella morganii S1
1 group_1210 EHELCC_03940 115650 116549 1 lysO DUF340 domain-containing protein Morganella morganii S2
2 group_1210 NLDBIP_03940 115446 116345 1 lysO DUF340 domain-containing protein Morganella morganii S4
3 group_1210 LHKJJB_09770 115560 116459 1 lysO DUF340 domain-containing protein Morganella morganii S3
4 group_1210 HKOGLL_09205 74593 75492 -1 lysO DUF340 domain-containing protein Morganella morganii S5
5 group_1210 F4V73_RS01220 257250 258149 -1 lysine exporter LysO family protein Morganella psychrotolerans
6 group_1210 PMI_RS03365 742061 742963 -1 lysine exporter LysO family protein Proteus mirabilis HI4320