Orthogroup:group_1269


Homologs in group_1269

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_07500 FBDBKF_07500 Morganella morganii S1 nirD nitrite reductase small subunit NirD
EHELCC_17170 EHELCC_17170 Morganella morganii S2 nirD nitrite reductase small subunit NirD
NLDBIP_13775 NLDBIP_13775 Morganella morganii S4 nirD nitrite reductase small subunit NirD
LHKJJB_09075 LHKJJB_09075 Morganella morganii S3 nirD nitrite reductase small subunit NirD
HKOGLL_08625 HKOGLL_08625 Morganella morganii S5 nirD nitrite reductase small subunit NirD
F4V73_RS13610 F4V73_RS13610 Morganella psychrotolerans nirD nitrite reductase small subunit NirD
PMI_RS07155 PMI_RS07155 Proteus mirabilis HI4320 nirD nitrite reductase small subunit NirD

Distribution of group_1269 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1269 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1269

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1269.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 nirD 7

Product

# Product Occurence
1 nitrite reductase small subunit NirD 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG2146 7 PQ Inorganic ion transport and metabolism (P)
Secondary metabolites biosynthesis, transport and catabolism (Q)		 Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K00363 7 nitrite reductase (NADH) small subunit [EC:1.7.1.15] Nitrogen metabolism
Metabolic pathways
Microbial metabolism in diverse environments		 Dissimilatory nitrate reduction, nitrate => ammonia

Pfam domain Annotation(s)

Domain ID Occurences Description
PF13806 7 Rieske-like [2Fe-2S] domain

Annotations of the 6 SwissProt hits

Annotation Number of occurrences
Nitrite reductase (NADH) small subunit 4
Nitrite reductase [NAD(P)H] 1
Nitrite reductase [NAD(P)H] large subunit 1

Protein length

Min length 110
Max length 112
Mean length (sd) 111.0 (0.6)
Median length 111.0

Protein length distribution