PF03948


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03948, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF03948
Description Ribosomal protein L9, C-terminal domain

Occurence in the database

PF03948 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1375 FBDBKF_08505 82121 82570 1 rplI 50S ribosomal protein L9 Morganella morganii S1
1 group_1375 EHELCC_13020 81155 81604 -1 rplI 50S ribosomal protein L9 Morganella morganii S2
2 group_1375 NLDBIP_13360 81155 81604 -1 rplI 50S ribosomal protein L9 Morganella morganii S4
3 group_1375 LHKJJB_13195 80839 81288 1 rplI 50S ribosomal protein L9 Morganella morganii S3
4 group_1375 HKOGLL_11835 81155 81604 -1 rplI 50S ribosomal protein L9 Morganella morganii S5
5 group_1375 F4V73_RS09730 48303 48752 1 rplI 50S ribosomal protein L9 Morganella psychrotolerans
6 group_1375 PMI_RS16805 3703794 3704243 1 rplI 50S ribosomal protein L9 Proteus mirabilis HI4320