PF03872


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03872, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF03872
Description Anti sigma-E protein RseA, N-terminal domain

Occurence in the database

PF03872 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_564 FBDBKF_01455 290006 290641 -1 rseA anti-sigma-E factor RseA Morganella morganii S1
1 group_564 EHELCC_00090 18227 18862 1 rseA anti-sigma-E factor RseA Morganella morganii S2
2 group_564 NLDBIP_03370 661274 661909 -1 rseA anti-sigma-E factor RseA Morganella morganii S4
3 group_564 LHKJJB_04885 268515 269150 -1 rseA anti-sigma-E factor RseA Morganella morganii S3
4 group_564 HKOGLL_02160 18432 19067 1 rseA anti-sigma-E factor RseA Morganella morganii S5
5 group_564 F4V73_RS01950 426009 426644 1 rseA anti-sigma-E factor RseA Morganella psychrotolerans
6 group_564 PMI_RS09345 2039955 2040614 -1 rseA anti-sigma-E factor RseA Proteus mirabilis HI4320