PF03788


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03788, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF03788
Description LrgA family

Occurence in the database

PF03788 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1183 FBDBKF_06820 27253 27705 -1 yohJ Putative effector of murein hydrolase LrgA, UPF0299 family Morganella morganii S1
1 group_1183 EHELCC_04150 158481 158933 1 yohJ Putative effector of murein hydrolase LrgA, UPF0299 family Morganella morganii S2
2 group_1183 NLDBIP_04150 158277 158729 1 yohJ Putative effector of murein hydrolase LrgA, UPF0299 family Morganella morganii S4
3 group_1183 LHKJJB_09980 158391 158843 1 yohJ Putative effector of murein hydrolase LrgA, UPF0299 family Morganella morganii S3
4 group_1183 HKOGLL_08995 32209 32661 -1 yohJ Putative effector of murein hydrolase LrgA, UPF0299 family Morganella morganii S5
5 group_1183 F4V73_RS00960 204038 204484 -1 CidA/LrgA family protein Morganella psychrotolerans
6 group_1183 PMI_RS03180 701642 702109 -1 CidA/LrgA family protein Proteus mirabilis HI4320