PF03652


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03652, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF03652
Description Holliday junction resolvase

Occurence in the database

PF03652 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2001 FBDBKF_15050 20312 20734 -1 ruvX Holliday junction resolvase RuvX Morganella morganii S1
1 group_2001 EHELCC_11195 64172 64594 1 ruvX Holliday junction resolvase RuvX Morganella morganii S2
2 group_2001 NLDBIP_11540 64172 64594 1 ruvX Holliday junction resolvase RuvX Morganella morganii S4
3 group_2001 LHKJJB_11400 64172 64594 1 ruvX Holliday junction resolvase RuvX Morganella morganii S3
4 group_2001 HKOGLL_10010 64172 64594 1 ruvX Holliday junction resolvase RuvX Morganella morganii S5
5 group_2001 F4V73_RS12400 64861 65286 1 ruvX Holliday junction resolvase RuvX Morganella psychrotolerans
6 group_2001 PMI_RS01615 387879 388298 -1 ruvX Holliday junction resolvase RuvX Proteus mirabilis HI4320