Orthogroup:group_2039


Homologs in group_2039

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_15295 FBDBKF_15295 Morganella morganii S1 ypjD ABC-type uncharacterized transport system, permease component
EHELCC_10950 EHELCC_10950 Morganella morganii S2 ypjD ABC-type uncharacterized transport system, permease component
NLDBIP_11295 NLDBIP_11295 Morganella morganii S4 ypjD ABC-type uncharacterized transport system, permease component
LHKJJB_11155 LHKJJB_11155 Morganella morganii S3 ypjD ABC-type uncharacterized transport system, permease component
HKOGLL_09765 HKOGLL_09765 Morganella morganii S5 ypjD ABC-type uncharacterized transport system, permease component
F4V73_RS12155 F4V73_RS12155 Morganella psychrotolerans - inner membrane protein YpjD
PMI_RS01850 PMI_RS01850 Proteus mirabilis HI4320 - inner membrane protein YpjD

Distribution of group_2039 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2039 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2039

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2039.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 ypjD 5
2 - 2

Product

# Product Occurence
1 ABC-type uncharacterized transport system, permease component 5
2 inner membrane protein YpjD 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG4137 7 R General function prediction only (R) ABC-type uncharacterized transport system, permease component

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01578 7 Cytochrome C assembly protein

Annotations of the 8 SwissProt hits

Annotation Number of occurrences
Cytochrome c biogenesis protein CcsA 4
Inner membrane protein YpjD 3
Uncharacterized 28.8 kDa protein in nifR3-like 5'region 1

Protein length

Min length 263
Max length 266
Mean length (sd) 263.4 (1.1)
Median length 263.0

Protein length distribution