PF03603


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03603, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF03603
Description DNA polymerase III psi subunit

Occurence in the database

PF03603 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2318 FBDBKF_17805 23004 23396 -1 holD DNA polymerase III, psi subunit Morganella morganii S1
1 group_2318 EHELCC_09830 202436 202828 -1 holD DNA polymerase III, psi subunit Morganella morganii S2
2 group_2318 NLDBIP_10210 202436 202828 -1 holD DNA polymerase III, psi subunit Morganella morganii S4
3 group_2318 LHKJJB_07545 14410 14802 1 holD DNA polymerase III, psi subunit Morganella morganii S3
4 group_2318 HKOGLL_07095 14410 14802 1 holD DNA polymerase III, psi subunit Morganella morganii S5
5 group_2318 F4V73_RS15160 11780 12187 1 DNA polymerase III subunit psi Morganella psychrotolerans
6 group_2318 PMI_RS12330 2733347 2733757 -1 DNA polymerase III subunit psi Proteus mirabilis HI4320