Homologs in group_2318

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_17805 FBDBKF_17805 48.5 Morganella morganii S1 holD DNA polymerase III, psi subunit
EHELCC_09830 EHELCC_09830 48.5 Morganella morganii S2 holD DNA polymerase III, psi subunit
NLDBIP_10210 NLDBIP_10210 48.5 Morganella morganii S4 holD DNA polymerase III, psi subunit
LHKJJB_07545 LHKJJB_07545 48.5 Morganella morganii S3 holD DNA polymerase III, psi subunit
HKOGLL_07095 HKOGLL_07095 48.5 Morganella morganii S5 holD DNA polymerase III, psi subunit
F4V73_RS15160 F4V73_RS15160 48.9 Morganella psychrotolerans - DNA polymerase III subunit psi

Distribution of the homologs in the orthogroup group_2318

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2318

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P28632 1.35e-22 89 35 2 133 1 holD DNA polymerase III subunit psi Escherichia coli (strain K12)
P43750 9.29e-15 69 29 3 134 3 holD DNA polymerase III subunit psi Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS12330
Feature type CDS
Gene -
Product DNA polymerase III subunit psi
Location 2733347 - 2733757 (strand: -1)
Length 411 (nucleotides) / 136 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2318
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03603 DNA polymerase III psi subunit

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3050 Replication, recombination and repair (L) L DNA polymerase III, psi subunit

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02344 DNA polymerase III subunit psi [EC:2.7.7.7] DNA replication
Mismatch repair
Homologous recombination		 -

Protein Sequence

MSRKDRMLAQLGIRQWVLRKPAVLKGEHSVQFPDTTRLLIITDDVVDLNNGLFSDIFSTMGIDKSEIYCITSEDVSLLTGSFTPACWLLGTDITLPAQYTSLRSPSLHQLYFDANAKRDLWKQIYQHEDHFPIKPC

Flanking regions ( +/- flanking 50bp)

ATGCCCTCTGATACTATGTACCGTTGTTCTACACTTGATAGGTAAATATCATGAGCCGTAAAGACAGAATGTTAGCCCAACTTGGAATTCGTCAATGGGTACTTCGTAAGCCTGCTGTATTAAAAGGCGAACATTCTGTGCAATTTCCGGATACCACTCGTTTACTTATCATTACTGATGATGTTGTTGATCTAAATAACGGGCTTTTCTCTGATATTTTTAGCACTATGGGAATAGATAAAAGTGAAATCTATTGTATTACCTCAGAGGATGTGAGCCTGCTCACAGGATCATTTACACCAGCCTGTTGGCTATTAGGTACTGATATCACTCTACCTGCTCAATATACTTCTCTGAGAAGCCCTTCATTACATCAATTATATTTTGATGCCAATGCAAAACGCGATCTTTGGAAACAAATCTATCAACATGAAGACCATTTCCCCATTAAACCCTGCTGATTTACCTTTAGCATGGGAAATTGAAAAACTAAGTCATTCATTCCCTTGGA