PF03551


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03551, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF03551
Description Transcriptional regulator PadR-like family

Occurence in the database

PF03551 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_672 FBDBKF_02410 176903 177658 1 padR PadR family transcriptional regulator Morganella morganii S1
1 group_672 EHELCC_02880 564723 565478 1 padR PadR family transcriptional regulator Morganella morganii S2
2 group_672 NLDBIP_00580 114658 115413 -1 padR PadR family transcriptional regulator Morganella morganii S4
3 group_672 LHKJJB_01455 277272 278027 1 padR PadR family transcriptional regulator Morganella morganii S3
4 group_672 HKOGLL_01495 282783 283538 1 padR PadR family transcriptional regulator Morganella morganii S5
5 group_672 F4V73_RS04790 1015680 1016429 1 PadR family transcriptional regulator Morganella psychrotolerans
6 group_672 PMI_RS05840 1279288 1280106 1 PadR family transcriptional regulator Proteus mirabilis HI4320