PF03550


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03550, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF03550
Description Outer membrane lipoprotein LolB

Occurence in the database

PF03550 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_609 FBDBKF_01915 70248 70877 -1 lolB lipoprotein insertase outer membrane protein LolB Morganella morganii S1
1 group_609 EHELCC_02385 458068 458697 -1 lolB lipoprotein insertase outer membrane protein LolB Morganella morganii S2
2 group_609 NLDBIP_01075 221439 222068 1 lolB lipoprotein insertase outer membrane protein LolB Morganella morganii S4
3 group_609 LHKJJB_00960 170617 171246 -1 lolB lipoprotein insertase outer membrane protein LolB Morganella morganii S3
4 group_609 HKOGLL_01000 176128 176757 -1 lolB lipoprotein insertase outer membrane protein LolB Morganella morganii S5
5 group_609 F4V73_RS04260 900469 901098 -1 lolB lipoprotein insertase outer membrane protein LolB Morganella psychrotolerans
6 group_609 PMI_RS05255 1148377 1149015 -1 lolB lipoprotein insertase outer membrane protein LolB Proteus mirabilis HI4320