PF03538


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03538, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 15 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF03538
Description Salmonella virulence plasmid 28.1kDa A protein

Occurence in the database

PF03538 is associated with 15 different proteins (see tab "Protein list" and "Profile")
The 15 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_145 FBDBKF_00735 122497 129951 1 Insecticidal toxin protein Morganella morganii S1
1 group_145 FBDBKF_01430 280294 287709 1 Insecticidal toxin protein Morganella morganii S1
2 group_3420 FBDBKF_13710 28393 31953 -1 Big-1 domain-containing protein Morganella morganii S1
3 group_145 EHELCC_00115 21159 28574 -1 Insecticidal toxin protein Morganella morganii S2
4 group_145 EHELCC_00810 178917 186371 -1 Insecticidal toxin protein Morganella morganii S2
5 group_3420 EHELCC_11380 113269 116829 -1 Big-1 domain-containing protein Morganella morganii S2
6 group_145 NLDBIP_02650 493765 501219 1 Insecticidal toxin protein Morganella morganii S4
7 group_145 NLDBIP_03345 651562 658977 1 Insecticidal toxin protein Morganella morganii S4
8 group_3420 NLDBIP_11725 113269 116829 -1 Big-1 domain-containing protein Morganella morganii S4
9 group_145 LHKJJB_04165 101006 108460 1 Insecticidal toxin protein Morganella morganii S3
10 group_145 LHKJJB_04860 258803 266218 1 Insecticidal toxin protein Morganella morganii S3
11 group_3420 LHKJJB_11585 113269 116829 -1 Big-1 domain-containing protein Morganella morganii S3
12 group_145 HKOGLL_02185 21364 28779 -1 Insecticidal toxin protein Morganella morganii S5
13 group_145 HKOGLL_02880 179122 186576 -1 Insecticidal toxin protein Morganella morganii S5
14 group_3420 HKOGLL_10195 113269 116829 -1 Big-1 domain-containing protein Morganella morganii S5