PF03477
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03477, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 22 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
Description
External link |
PF03477 |
Description |
ATP cone domain |
Occurence in the database
PF03477 is associated with 22 different proteins (see tab "Protein list" and "Profile") |
The 22 proteins are classified into 3 different orthogroup(s)
|
# |
Orthogroup |
Locus |
Start |
Stop |
S. |
Gene |
Product |
Organism |
0 |
group_221 |
FBDBKF_00400 |
58179 |
60473 |
1 |
nrdA |
class 1a ribonucleoside-diphosphate reductase subunit alpha |
Morganella morganii S1 |
1 |
group_1423 |
FBDBKF_08785 |
136100 |
138286 |
-1 |
nrdD |
anaerobic ribonucleoside-triphosphate reductase |
Morganella morganii S1 |
2 |
group_2257 |
FBDBKF_17385 |
7802 |
8251 |
-1 |
nrdR |
transcriptional regulator NrdR |
Morganella morganii S1 |
3 |
group_221 |
EHELCC_01145 |
248395 |
250689 |
-1 |
nrdA |
class 1a ribonucleoside-diphosphate reductase subunit alpha |
Morganella morganii S2 |
4 |
group_1423 |
EHELCC_12740 |
25439 |
27625 |
1 |
nrdD |
anaerobic ribonucleoside-triphosphate reductase |
Morganella morganii S2 |
5 |
group_2257 |
EHELCC_17280 |
7802 |
8251 |
-1 |
nrdR |
transcriptional regulator NrdR |
Morganella morganii S2 |
6 |
group_221 |
NLDBIP_02315 |
429447 |
431741 |
1 |
nrdA |
class 1a ribonucleoside-diphosphate reductase subunit alpha |
Morganella morganii S4 |
7 |
group_1423 |
NLDBIP_13080 |
25439 |
27625 |
1 |
nrdD |
anaerobic ribonucleoside-triphosphate reductase |
Morganella morganii S4 |
8 |
group_2257 |
NLDBIP_17915 |
34545 |
34994 |
1 |
nrdR |
transcriptional regulator NrdR |
Morganella morganii S4 |
9 |
group_221 |
LHKJJB_03830 |
36688 |
38982 |
1 |
nrdA |
class 1a ribonucleoside-diphosphate reductase subunit alpha |
Morganella morganii S3 |
10 |
group_1423 |
LHKJJB_13475 |
134818 |
137004 |
-1 |
nrdD |
anaerobic ribonucleoside-triphosphate reductase |
Morganella morganii S3 |
11 |
group_2257 |
LHKJJB_17835 |
34543 |
34992 |
1 |
nrdR |
transcriptional regulator NrdR |
Morganella morganii S3 |
12 |
group_221 |
HKOGLL_03215 |
248600 |
250894 |
-1 |
nrdA |
class 1a ribonucleoside-diphosphate reductase subunit alpha |
Morganella morganii S5 |
13 |
group_1423 |
HKOGLL_11555 |
25439 |
27625 |
1 |
nrdD |
anaerobic ribonucleoside-triphosphate reductase |
Morganella morganii S5 |
14 |
group_2257 |
HKOGLL_17845 |
34543 |
34992 |
1 |
nrdR |
transcriptional regulator NrdR |
Morganella morganii S5 |
15 |
group_221 |
F4V73_RS06380 |
1330639 |
1332936 |
1 |
nrdA |
class 1a ribonucleoside-diphosphate reductase subunit alpha |
Morganella psychrotolerans |
16 |
group_1423 |
F4V73_RS10000 |
104166 |
106304 |
-1 |
nrdD |
anaerobic ribonucleoside-triphosphate reductase |
Morganella psychrotolerans |
17 |
group_2257 |
F4V73_RS16560 |
131506 |
131955 |
-1 |
nrdR |
transcriptional regulator NrdR |
Morganella psychrotolerans |
18 |
group_221 |
F4V73_RS17910 |
23659 |
25947 |
-1 |
nrdA |
class 1a ribonucleoside-diphosphate reductase subunit alpha |
Morganella psychrotolerans |
19 |
group_2257 |
PMI_RS00385 |
108907 |
109356 |
1 |
nrdR |
transcriptional regulator NrdR |
Proteus mirabilis HI4320 |
20 |
group_221 |
PMI_RS08510 |
1855565 |
1857856 |
1 |
nrdA |
class 1a ribonucleoside-diphosphate reductase subunit alpha |
Proteus mirabilis HI4320 |
21 |
group_1423 |
PMI_RS17200 |
3778307 |
3780445 |
-1 |
nrdD |
anaerobic ribonucleoside-triphosphate reductase |
Proteus mirabilis HI4320 |