PF03477


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03477, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 22 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF03477
Description ATP cone domain

Occurence in the database

PF03477 is associated with 22 different proteins (see tab "Protein list" and "Profile")
The 22 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_221 FBDBKF_00400 58179 60473 1 nrdA class 1a ribonucleoside-diphosphate reductase subunit alpha Morganella morganii S1
1 group_1423 FBDBKF_08785 136100 138286 -1 nrdD anaerobic ribonucleoside-triphosphate reductase Morganella morganii S1
2 group_2257 FBDBKF_17385 7802 8251 -1 nrdR transcriptional regulator NrdR Morganella morganii S1
3 group_221 EHELCC_01145 248395 250689 -1 nrdA class 1a ribonucleoside-diphosphate reductase subunit alpha Morganella morganii S2
4 group_1423 EHELCC_12740 25439 27625 1 nrdD anaerobic ribonucleoside-triphosphate reductase Morganella morganii S2
5 group_2257 EHELCC_17280 7802 8251 -1 nrdR transcriptional regulator NrdR Morganella morganii S2
6 group_221 NLDBIP_02315 429447 431741 1 nrdA class 1a ribonucleoside-diphosphate reductase subunit alpha Morganella morganii S4
7 group_1423 NLDBIP_13080 25439 27625 1 nrdD anaerobic ribonucleoside-triphosphate reductase Morganella morganii S4
8 group_2257 NLDBIP_17915 34545 34994 1 nrdR transcriptional regulator NrdR Morganella morganii S4
9 group_221 LHKJJB_03830 36688 38982 1 nrdA class 1a ribonucleoside-diphosphate reductase subunit alpha Morganella morganii S3
10 group_1423 LHKJJB_13475 134818 137004 -1 nrdD anaerobic ribonucleoside-triphosphate reductase Morganella morganii S3
11 group_2257 LHKJJB_17835 34543 34992 1 nrdR transcriptional regulator NrdR Morganella morganii S3
12 group_221 HKOGLL_03215 248600 250894 -1 nrdA class 1a ribonucleoside-diphosphate reductase subunit alpha Morganella morganii S5
13 group_1423 HKOGLL_11555 25439 27625 1 nrdD anaerobic ribonucleoside-triphosphate reductase Morganella morganii S5
14 group_2257 HKOGLL_17845 34543 34992 1 nrdR transcriptional regulator NrdR Morganella morganii S5
15 group_221 F4V73_RS06380 1330639 1332936 1 nrdA class 1a ribonucleoside-diphosphate reductase subunit alpha Morganella psychrotolerans
16 group_1423 F4V73_RS10000 104166 106304 -1 nrdD anaerobic ribonucleoside-triphosphate reductase Morganella psychrotolerans
17 group_2257 F4V73_RS16560 131506 131955 -1 nrdR transcriptional regulator NrdR Morganella psychrotolerans
18 group_221 F4V73_RS17910 23659 25947 -1 nrdA class 1a ribonucleoside-diphosphate reductase subunit alpha Morganella psychrotolerans
19 group_2257 PMI_RS00385 108907 109356 1 nrdR transcriptional regulator NrdR Proteus mirabilis HI4320
20 group_221 PMI_RS08510 1855565 1857856 1 nrdA class 1a ribonucleoside-diphosphate reductase subunit alpha Proteus mirabilis HI4320
21 group_1423 PMI_RS17200 3778307 3780445 -1 nrdD anaerobic ribonucleoside-triphosphate reductase Proteus mirabilis HI4320