PF03462


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03462, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF03462
Description PCRF domain

Occurence in the database

PF03462 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_611 FBDBKF_01925 72457 73539 1 prfA peptide chain release factor 1 Morganella morganii S1
1 group_815 FBDBKF_04085 2123 3022 -1 prfB peptide chain release factor 2 Morganella morganii S1
2 group_611 EHELCC_02395 460277 461359 1 prfA peptide chain release factor 1 Morganella morganii S2
3 group_815 EHELCC_05375 61580 62479 -1 prfB peptide chain release factor 2 Morganella morganii S2
4 group_611 NLDBIP_01065 218777 219859 -1 prfA peptide chain release factor 1 Morganella morganii S4
5 group_815 NLDBIP_05695 102645 103544 -1 prfB peptide chain release factor 2 Morganella morganii S4
6 group_611 LHKJJB_00970 172826 173908 1 prfA peptide chain release factor 1 Morganella morganii S3
7 group_815 LHKJJB_02575 80169 81068 -1 prfB peptide chain release factor 2 Morganella morganii S3
8 group_611 HKOGLL_01010 178337 179419 1 prfA peptide chain release factor 1 Morganella morganii S5
9 group_815 HKOGLL_06050 2033 2932 -1 prfB peptide chain release factor 2 Morganella morganii S5
10 group_611 F4V73_RS04270 902698 903780 1 prfA peptide chain release factor 1 Morganella psychrotolerans
11 group_815 F4V73_RS08525 1761134 1761208 -1 prfB peptide chain release factor 2 Morganella psychrotolerans
12 group_611 PMI_RS05265 1150546 1151628 1 prfA peptide chain release factor 1 Proteus mirabilis HI4320
13 group_815 PMI_RS09905 2149698 2149772 -1 prfB peptide chain release factor 2 Proteus mirabilis HI4320