PF03461
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03461, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 7 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
Description
External link |
PF03461 |
Description |
TRCF domain |
Occurence in the database
PF03461 is associated with 7 different proteins (see tab "Protein list" and "Profile") |
The 7 proteins are classified into 1 different orthogroup(s)
|
# |
Orthogroup |
Locus |
Start |
Stop |
S. |
Gene |
Product |
Organism |
0 |
group_1949 |
FBDBKF_14635 |
23703 |
27143 |
1 |
mfd |
transcription-repair coupling factor |
Morganella morganii S1 |
1 |
group_1949 |
EHELCC_15440 |
53779 |
57219 |
1 |
mfd |
transcription-repair coupling factor |
Morganella morganii S2 |
2 |
group_1949 |
NLDBIP_15970 |
53779 |
57219 |
1 |
mfd |
transcription-repair coupling factor |
Morganella morganii S4 |
3 |
group_1949 |
LHKJJB_15870 |
59467 |
62907 |
-1 |
mfd |
transcription-repair coupling factor |
Morganella morganii S3 |
4 |
group_1949 |
HKOGLL_14990 |
58679 |
62119 |
-1 |
mfd |
transcription-repair coupling factor |
Morganella morganii S5 |
5 |
group_1949 |
F4V73_RS07430 |
1552073 |
1555513 |
1 |
mfd |
transcription-repair coupling factor |
Morganella psychrotolerans |
6 |
group_1949 |
PMI_RS04305 |
965251 |
968706 |
-1 |
mfd |
transcription-repair coupling factor |
Proteus mirabilis HI4320 |