PF03349


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03349, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF03349
Description Outer membrane protein transport protein (OMPP1/FadL/TodX)

Occurence in the database

PF03349 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_378 FBDBKF_14375 75588 76985 1 fadL long-chain fatty acid transporter FadL Morganella morganii S1
1 group_378 EHELCC_07905 40000 41397 -1 fadL long-chain fatty acid transporter FadL Morganella morganii S2
2 group_378 NLDBIP_08230 40000 41397 -1 fadL long-chain fatty acid transporter FadL Morganella morganii S4
3 group_378 LHKJJB_06035 215762 217159 1 fadL long-chain fatty acid transporter FadL Morganella morganii S3
4 group_378 HKOGLL_04880 24591 25988 -1 fadL long-chain fatty acid transporter FadL Morganella morganii S5
5 group_378 F4V73_RS01720 380806 381984 1 OmpP1/FadL family transporter Morganella psychrotolerans
6 group_378 F4V73_RS02530 533590 534930 -1 fadL long-chain fatty acid transporter FadL Morganella psychrotolerans
7 group_378 PMI_RS08875 1940994 1942355 1 fadL long-chain fatty acid transporter FadL Proteus mirabilis HI4320