PF03067


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03067, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF03067
Description Lytic polysaccharide mono-oxygenase, cellulose-degrading

Occurence in the database

PF03067 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2057 FBDBKF_15420 9401 9976 1 Chitin-binding protein Morganella morganii S1
1 group_2057 EHELCC_15780 8701 9276 1 Chitin-binding protein Morganella morganii S2
2 group_2057 NLDBIP_16590 71387 71962 -1 Chitin-binding protein Morganella morganii S4
3 group_2057 LHKJJB_16215 8701 9276 1 Chitin-binding protein Morganella morganii S3
4 group_2057 HKOGLL_15985 8701 9276 1 Chitin-binding protein Morganella morganii S5
5 group_2057 F4V73_RS17725 187142 187717 -1 lytic polysaccharide monooxygenase Morganella psychrotolerans
6 group_2057 PMI_RS13115 2911710 2912321 -1 lytic polysaccharide monooxygenase Proteus mirabilis HI4320