PF02938


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02938, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF02938
Description GAD domain

Occurence in the database

PF02938 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_631 FBDBKF_02040 96684 98453 1 aspS aspartate--tRNA ligase Morganella morganii S1
1 group_631 EHELCC_02510 484504 486273 1 aspS aspartate--tRNA ligase Morganella morganii S2
2 group_631 NLDBIP_00950 193863 195632 -1 aspS aspartate--tRNA ligase Morganella morganii S4
3 group_631 LHKJJB_01085 197053 198822 1 aspS aspartate--tRNA ligase Morganella morganii S3
4 group_631 HKOGLL_01125 202564 204333 1 aspS aspartate--tRNA ligase Morganella morganii S5
5 group_631 F4V73_RS04405 932503 934272 1 aspS aspartate--tRNA ligase Morganella psychrotolerans
6 group_631 PMI_RS05390 1179763 1181547 1 aspS aspartate--tRNA ligase Proteus mirabilis HI4320