PF02900


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02900, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF02900
Description Catalytic LigB subunit of aromatic ring-opening dioxygenase

Occurence in the database

PF02900 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1113 FBDBKF_06345 103481 104260 -1 ygiD 4,5-DOPA dioxygenase extradiol Morganella morganii S1
1 group_1113 EHELCC_09390 104053 104832 -1 ygiD 4,5-DOPA dioxygenase extradiol Morganella morganii S2
2 group_1113 NLDBIP_09770 104053 104832 -1 ygiD 4,5-DOPA dioxygenase extradiol Morganella morganii S4
3 group_1113 LHKJJB_07985 112406 113185 1 ygiD 4,5-DOPA dioxygenase extradiol Morganella morganii S3
4 group_1113 HKOGLL_07535 112406 113185 1 ygiD 4,5-DOPA dioxygenase extradiol Morganella morganii S5
5 group_1113 F4V73_RS15575 109818 110597 1 ygiD 4,5-DOPA dioxygenase extradiol Morganella psychrotolerans
6 group_1113 PMI_RS11635 2571138 2571923 -1 ygiD 4,5-DOPA dioxygenase extradiol Proteus mirabilis HI4320