PF02881


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02881, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF02881
Description SRP54-type protein, helical bundle domain

Occurence in the database

PF02881 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_766 FBDBKF_03530 110219 111994 -1 ftsY signal recognition particle-docking protein FtsY Morganella morganii S1
1 group_2040 FBDBKF_15300 68786 70147 1 ffh signal recognition particle protein Morganella morganii S1
2 group_766 EHELCC_07005 135109 136884 1 ftsY signal recognition particle-docking protein FtsY Morganella morganii S2
3 group_2040 EHELCC_10945 14759 16120 -1 ffh signal recognition particle protein Morganella morganii S2
4 group_766 NLDBIP_07330 134982 136757 1 ftsY signal recognition particle-docking protein FtsY Morganella morganii S4
5 group_2040 NLDBIP_11290 14759 16120 -1 ffh signal recognition particle protein Morganella morganii S4
6 group_766 LHKJJB_06865 98728 100503 1 ftsY signal recognition particle-docking protein FtsY Morganella morganii S3
7 group_2040 LHKJJB_11150 14759 16120 -1 ffh signal recognition particle protein Morganella morganii S3
8 group_766 HKOGLL_04065 132884 134659 -1 ftsY signal recognition particle-docking protein FtsY Morganella morganii S5
9 group_2040 HKOGLL_09760 14759 16120 -1 ffh signal recognition particle protein Morganella morganii S5
10 group_766 F4V73_RS11370 415329 417494 1 ftsY signal recognition particle-docking protein FtsY Morganella psychrotolerans
11 group_2040 F4V73_RS12150 14011 15372 -1 ffh signal recognition particle protein Morganella psychrotolerans
12 group_2040 PMI_RS01855 436518 437879 1 ffh signal recognition particle protein Proteus mirabilis HI4320
13 group_766 PMI_RS17940 3942294 3944132 1 ftsY signal recognition particle-docking protein FtsY Proteus mirabilis HI4320