PF02874


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02874, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 15 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF02874
Description ATP synthase alpha/beta family, beta-barrel domain

Occurence in the database

PF02874 is associated with 15 different proteins (see tab "Protein list" and "Profile")
The 15 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2070 FBDBKF_15485 21378 22919 1 atpA F0F1 ATP synthase subunit alpha Morganella morganii S1
1 group_2072 FBDBKF_15495 23872 25254 1 atpD F0F1 ATP synthase subunit beta Morganella morganii S1
2 group_2070 EHELCC_15845 20678 22219 1 atpA F0F1 ATP synthase subunit alpha Morganella morganii S2
3 group_2072 EHELCC_15855 23172 24554 1 atpD F0F1 ATP synthase subunit beta Morganella morganii S2
4 group_2072 NLDBIP_16515 56109 57491 -1 atpD F0F1 ATP synthase subunit beta Morganella morganii S4
5 group_2070 NLDBIP_16525 58444 59985 -1 atpA F0F1 ATP synthase subunit alpha Morganella morganii S4
6 group_2070 LHKJJB_16280 20678 22219 1 atpA F0F1 ATP synthase subunit alpha Morganella morganii S3
7 group_2072 LHKJJB_16290 23172 24554 1 atpD F0F1 ATP synthase subunit beta Morganella morganii S3
8 group_2070 HKOGLL_16050 20678 22219 1 atpA F0F1 ATP synthase subunit alpha Morganella morganii S5
9 group_2072 HKOGLL_16060 23172 24554 1 atpD F0F1 ATP synthase subunit beta Morganella morganii S5
10 group_225 F4V73_RS08315 1723851 1725170 1 FliI/YscN family ATPase Morganella psychrotolerans
11 group_2072 F4V73_RS17650 171887 173269 -1 atpD F0F1 ATP synthase subunit beta Morganella psychrotolerans
12 group_2070 F4V73_RS17660 174221 175762 -1 atpA F0F1 ATP synthase subunit alpha Morganella psychrotolerans
13 group_2070 PMI_RS15165 3364028 3365569 1 atpA F0F1 ATP synthase subunit alpha Proteus mirabilis HI4320
14 group_2072 PMI_RS15175 3366525 3367907 1 atpD F0F1 ATP synthase subunit beta Proteus mirabilis HI4320