PF02810


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02810, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF02810
Description SEC-C motif

Occurence in the database

PF02810 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_848 FBDBKF_04290 44876 47587 -1 secA preprotein translocase subunit SecA Morganella morganii S1
1 group_972 FBDBKF_05370 83422 83898 1 ychJ Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains Morganella morganii S1
2 group_848 EHELCC_05580 104333 107044 -1 secA preprotein translocase subunit SecA Morganella morganii S2
3 group_972 EHELCC_12220 97596 98072 -1 ychJ Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains Morganella morganii S2
4 group_848 NLDBIP_05900 145398 148109 -1 secA preprotein translocase subunit SecA Morganella morganii S4
5 group_972 NLDBIP_12560 97551 98027 -1 ychJ Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains Morganella morganii S4
6 group_848 LHKJJB_02780 122922 125633 -1 secA preprotein translocase subunit SecA Morganella morganii S3
7 group_972 LHKJJB_12420 97596 98072 -1 ychJ Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains Morganella morganii S3
8 group_848 HKOGLL_06255 44786 47497 -1 secA preprotein translocase subunit SecA Morganella morganii S5
9 group_972 HKOGLL_11035 97596 98072 -1 ychJ Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains Morganella morganii S5
10 group_972 F4V73_RS05825 1240330 1240806 1 YchJ family protein Morganella psychrotolerans
11 group_848 F4V73_RS08735 1805979 1808690 -1 secA preprotein translocase subunit SecA Morganella psychrotolerans
12 group_972 PMI_RS07225 1582815 1583306 1 YchJ family protein Proteus mirabilis HI4320
13 group_848 PMI_RS10155 2223118 2225826 -1 secA preprotein translocase subunit SecA Proteus mirabilis HI4320