PF02748


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02748, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF02748
Description Aspartate carbamoyltransferase regulatory chain, metal binding domain

Occurence in the database

PF02748 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1424 FBDBKF_08805 141005 141469 -1 pyrI aspartate carbamoyltransferase regulatory subunit Morganella morganii S1
1 group_1424 EHELCC_12720 22256 22720 1 pyrI aspartate carbamoyltransferase regulatory subunit Morganella morganii S2
2 group_1424 NLDBIP_13060 22256 22720 1 pyrI aspartate carbamoyltransferase regulatory subunit Morganella morganii S4
3 group_1424 LHKJJB_13495 139723 140187 -1 pyrI aspartate carbamoyltransferase regulatory subunit Morganella morganii S3
4 group_1424 HKOGLL_11535 22256 22720 1 pyrI aspartate carbamoyltransferase regulatory subunit Morganella morganii S5
5 group_1424 F4V73_RS10025 111572 112036 -1 pyrI aspartate carbamoyltransferase regulatory subunit Morganella psychrotolerans
6 group_1424 PMI_RS17215 3781515 3781973 -1 pyrI aspartate carbamoyltransferase regulatory subunit Proteus mirabilis HI4320