PF02646


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02646, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF02646
Description RmuC family

Occurence in the database

PF02646 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2217 FBDBKF_16945 16465 17889 -1 rmuC DNA anti-recombination protein (rearrangement mutator) RmuC Morganella morganii S1
1 group_2217 EHELCC_16645 50621 52045 1 rmuC DNA anti-recombination protein (rearrangement mutator) RmuC Morganella morganii S2
2 group_2217 NLDBIP_16855 50621 52045 1 rmuC DNA anti-recombination protein (rearrangement mutator) RmuC Morganella morganii S4
3 group_2217 LHKJJB_16615 16465 17889 -1 rmuC DNA anti-recombination protein (rearrangement mutator) RmuC Morganella morganii S3
4 group_2217 HKOGLL_17580 16465 17889 -1 rmuC DNA anti-recombination protein (rearrangement mutator) RmuC Morganella morganii S5
5 group_2217 F4V73_RS18415 16613 18037 -1 rmuC DNA recombination protein RmuC Morganella psychrotolerans
6 group_2217 PMI_RS17570 3856854 3858194 1 rmuC DNA recombination protein RmuC Proteus mirabilis HI4320