PF02601


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02601, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF02601
Description Exonuclease VII, large subunit

Occurence in the database

PF02601 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2233 FBDBKF_17110 6458 7834 1 xseA exodeoxyribonuclease VII large subunit Morganella morganii S1
1 group_2233 EHELCC_01780 347667 349043 -1 xseA exodeoxyribonuclease VII large subunit Morganella morganii S2
2 group_2233 NLDBIP_01680 331093 332469 1 xseA exodeoxyribonuclease VII large subunit Morganella morganii S4
3 group_2233 LHKJJB_00355 60216 61592 -1 xseA exodeoxyribonuclease VII large subunit Morganella morganii S3
4 group_2233 HKOGLL_00395 65727 67103 -1 xseA exodeoxyribonuclease VII large subunit Morganella morganii S5
5 group_2233 F4V73_RS05870 1250872 1252248 1 xseA exodeoxyribonuclease VII large subunit Morganella psychrotolerans
6 group_2233 PMI_RS07530 1641325 1642713 1 xseA exodeoxyribonuclease VII large subunit Proteus mirabilis HI4320