PF02554


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02554, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 13 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF02554
Description Carbon starvation protein CstA

Occurence in the database

PF02554 is associated with 13 different proteins (see tab "Protein list" and "Profile")
The 13 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_65 FBDBKF_03680 139291 141393 1 cstA pyruvate/proton symporter CstA Morganella morganii S1
1 group_65 FBDBKF_07845 95038 97188 1 cstA Carbon starvation protein CstA (peptide/pyruvate transporter) Morganella morganii S1
2 group_65 EHELCC_06855 105710 107812 -1 cstA pyruvate/proton symporter CstA Morganella morganii S2
3 group_65 EHELCC_13675 69232 71382 1 cstA Carbon starvation protein CstA (peptide/pyruvate transporter) Morganella morganii S2
4 group_65 NLDBIP_07180 105583 107685 -1 cstA pyruvate/proton symporter CstA Morganella morganii S4
5 group_65 NLDBIP_14120 90107 92257 1 cstA Carbon starvation protein CstA (peptide/pyruvate transporter) Morganella morganii S4
6 group_65 LHKJJB_06715 69329 71431 -1 cstA pyruvate/proton symporter CstA Morganella morganii S3
7 group_65 LHKJJB_08730 67492 69642 -1 cstA Carbon starvation protein CstA (peptide/pyruvate transporter) Morganella morganii S3
8 group_65 HKOGLL_04215 161956 164058 1 cstA pyruvate/proton symporter CstA Morganella morganii S5
9 group_65 HKOGLL_08280 67492 69642 -1 cstA Carbon starvation protein CstA (peptide/pyruvate transporter) Morganella morganii S5
10 group_65 F4V73_RS11190 376101 378203 -1 cstA pyruvate/proton symporter CstA Morganella psychrotolerans
11 group_65 F4V73_RS13195 258426 260576 -1 carbon starvation CstA family protein Morganella psychrotolerans
12 group_65 PMI_RS00685 176000 178150 1 carbon starvation CstA family protein Proteus mirabilis HI4320