PF02508


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02508, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 28 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF02508
Description Rnf-Nqr subunit, membrane protein

Occurence in the database

PF02508 is associated with 28 different proteins (see tab "Protein list" and "Profile")
The 28 proteins are classified into 4 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_925 FBDBKF_05025 10956 11537 1 rsxA electron transport complex subunit RsxA Morganella morganii S1
1 group_930 FBDBKF_05050 16226 16930 1 rnfE Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfE subunit Morganella morganii S1
2 group_2017 FBDBKF_15145 40084 40713 1 nqrD NADH:ubiquinone reductase (Na(+)-transporting) subunit D Morganella morganii S1
3 group_2018 FBDBKF_15150 40717 41313 1 nqrE NADH:ubiquinone reductase (Na(+)-transporting) subunit E Morganella morganii S1
4 group_2018 EHELCC_11095 43593 44189 -1 nqrE NADH:ubiquinone reductase (Na(+)-transporting) subunit E Morganella morganii S2
5 group_2017 EHELCC_11100 44193 44822 -1 nqrD NADH:ubiquinone reductase (Na(+)-transporting) subunit D Morganella morganii S2
6 group_930 EHELCC_12540 164564 165268 -1 rnfE Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfE subunit Morganella morganii S2
7 group_925 EHELCC_12565 169957 170538 -1 rsxA electron transport complex subunit RsxA Morganella morganii S2
8 group_2018 NLDBIP_11440 43593 44189 -1 nqrE NADH:ubiquinone reductase (Na(+)-transporting) subunit E Morganella morganii S4
9 group_2017 NLDBIP_11445 44193 44822 -1 nqrD NADH:ubiquinone reductase (Na(+)-transporting) subunit D Morganella morganii S4
10 group_930 NLDBIP_12880 164519 165223 -1 rnfE Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfE subunit Morganella morganii S4
11 group_925 NLDBIP_12905 169912 170493 -1 rsxA electron transport complex subunit RsxA Morganella morganii S4
12 group_2018 LHKJJB_11300 43593 44189 -1 nqrE NADH:ubiquinone reductase (Na(+)-transporting) subunit E Morganella morganii S3
13 group_2017 LHKJJB_11305 44193 44822 -1 nqrD NADH:ubiquinone reductase (Na(+)-transporting) subunit D Morganella morganii S3
14 group_930 LHKJJB_12740 164564 165268 -1 rnfE Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfE subunit Morganella morganii S3
15 group_925 LHKJJB_12765 169957 170538 -1 rsxA electron transport complex subunit RsxA Morganella morganii S3
16 group_2018 HKOGLL_09910 43593 44189 -1 nqrE NADH:ubiquinone reductase (Na(+)-transporting) subunit E Morganella morganii S5
17 group_2017 HKOGLL_09915 44193 44822 -1 nqrD NADH:ubiquinone reductase (Na(+)-transporting) subunit D Morganella morganii S5
18 group_930 HKOGLL_11355 164564 165268 -1 rnfE Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfE subunit Morganella morganii S5
19 group_925 HKOGLL_11380 169957 170538 -1 rsxA electron transport complex subunit RsxA Morganella morganii S5
20 group_925 F4V73_RS05465 1162693 1163274 1 rsxA electron transport complex subunit RsxA Morganella psychrotolerans
21 group_930 F4V73_RS05490 1167641 1168345 1 electron transport complex subunit E Morganella psychrotolerans
22 group_2018 F4V73_RS12295 43300 43896 -1 nqrE NADH:ubiquinone reductase (Na(+)-transporting) subunit E Morganella psychrotolerans
23 group_2017 F4V73_RS12300 43900 44529 -1 NADH:ubiquinone reductase (Na(+)-transporting) subunit D Morganella psychrotolerans
24 group_2017 PMI_RS01700 405177 405806 1 NADH:ubiquinone reductase (Na(+)-transporting) subunit D Proteus mirabilis HI4320
25 group_2018 PMI_RS01705 405812 406408 1 nqrE NADH:ubiquinone reductase (Na(+)-transporting) subunit E Proteus mirabilis HI4320
26 group_925 PMI_RS06290 1378996 1379577 1 rsxA electron transport complex subunit RsxA Proteus mirabilis HI4320
27 group_930 PMI_RS06315 1384437 1385141 1 electron transport complex subunit E Proteus mirabilis HI4320