Help to interpret the results
Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Pfam domain PF02470
Protein list: lists the 15 occurences of the Pfam domain within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Pfam domain of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domain has been clustered.
Orthogroups are shown in red if they are annotated with that particular Pfam domain in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Pfam domain prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domain.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domain prediction.
Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism | |
---|---|---|---|---|---|---|---|---|
0 | group_798 | FBDBKF_03205 | 43788 | 44306 | -1 | mlaD | outer membrane lipid asymmetry maintenance protein MlaD | Morganella morganii S1 |
1 | group_267 | FBDBKF_07310 | 146179 | 147828 | 1 | pqiB | intermembrane transport protein PqiB | Morganella morganii S1 |
2 | group_267 | EHELCC_03660 | 38358 | 40007 | -1 | pqiB | intermembrane transport protein PqiB | Morganella morganii S2 |
3 | group_798 | EHELCC_07330 | 202797 | 203315 | 1 | mlaD | outer membrane lipid asymmetry maintenance protein MlaD | Morganella morganii S2 |
4 | group_267 | NLDBIP_03660 | 38154 | 39803 | -1 | pqiB | intermembrane transport protein PqiB | Morganella morganii S4 |
5 | group_798 | NLDBIP_07655 | 202670 | 203188 | 1 | mlaD | outer membrane lipid asymmetry maintenance protein MlaD | Morganella morganii S4 |
6 | group_798 | LHKJJB_07190 | 166416 | 166934 | 1 | mlaD | outer membrane lipid asymmetry maintenance protein MlaD | Morganella morganii S3 |
7 | group_267 | LHKJJB_09490 | 38268 | 39917 | -1 | pqiB | intermembrane transport protein PqiB | Morganella morganii S3 |
8 | group_798 | HKOGLL_03740 | 66453 | 66971 | -1 | mlaD | outer membrane lipid asymmetry maintenance protein MlaD | Morganella morganii S5 |
9 | group_267 | HKOGLL_09485 | 151135 | 152784 | 1 | pqiB | intermembrane transport protein PqiB | Morganella morganii S5 |
10 | group_267 | F4V73_RS01495 | 334622 | 336274 | 1 | pqiB | intermembrane transport protein PqiB | Morganella psychrotolerans |
11 | group_798 | F4V73_RS11715 | 492821 | 493333 | 1 | mlaD | outer membrane lipid asymmetry maintenance protein MlaD | Morganella psychrotolerans |
12 | group_267 | PMI_RS03820 | 866305 | 867957 | 1 | pqiB | intermembrane transport protein PqiB | Proteus mirabilis HI4320 |
13 | group_267 | PMI_RS04915 | 1073436 | 1075754 | -1 | MlaD family protein | Proteus mirabilis HI4320 | |
14 | group_798 | PMI_RS18195 | 3993063 | 3993599 | 1 | mlaD | outer membrane lipid asymmetry maintenance protein MlaD | Proteus mirabilis HI4320 |